Rasko, David A.: search on Z-Library

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1

Hybrid error correction and de novo assembly of single-molecule sequencing reads

Koren, Sergey, Schatz, Michael C, Walenz, Brian P, Martin, Jeffrey, Howard, Jason T, Ganapathy, Ganeshkumar, Wang, Zhong, Rasko, David A, McCombie, W Richard, Jarvis, Erich D, Phillippy, Adam M

Journal:

Nature Biotechnology

Year:

2012

Language:

english

File:

PDF, 765 KB

english, 2012

2

Whole-Genome Sequencing of Multidrug-Resistant Campylobacter fetus subsp. fetus NWU_ED24, Isolated from a Bovine Sheath Wash Sample

Tshipamba, Mpinda Edoaurd, Alayande, Kazeem Adekunle, Lubanza, Ngoma, Mwanza, Mulunda, Rasko, David

Journal:

Microbiology Resource Announcements

Year:

2020

File:

PDF, 132 KB

2020

3

Complete Genome Sequence of Pandoraea pnomenusa TF-18, a Multidrug-Resistant Organism Isolated from the Rhizosphere of Rice ( Oryza sativa L. subsp. japonica )

Mangalea, Mihnea R., Luna, Emily K., Ziegle, Janet, Chang, Christine, Bosco-Lauth, Angela M., Bowen, Richard A., Leach, Jan E., Borlee, Bradley R., Rasko, David

Journal:

Microbiology Resource Announcements

Year:

2020

File:

PDF, 134 KB

2020

4

Cumulative acquisition of pathogenicity islands has shaped virulence potential and contributed to the emergence of LEE-negative Shiga toxin-producing Escherichia coli strains

Montero, David Arturo, Canto, Felipe Del, Velasco, Juliana, Colello, Rocío, Padola, Nora Lia, Salazar, Juan Carlos, Martin, Carla San, Oñate, Angel, Blanco, Jorge, Rasko, David A., Contreras, Carmen,

Journal:

Emerging Microbes & Infections

Year:

2019

Language:

english

File:

PDF, 3.11 MB

english, 2019

5

Targeted enrichment outperforms other enrichment techniques and enables more multi-species RNA-Seq analyses

Chung, Matthew, Teigen, Laura, Liu, Hong, Libro, Silvia, Shetty, Amol, Kumar, Nikhil, Zhao, Xuechu, Bromley, Robin E., Tallon, Luke J., Sadzewicz, Lisa, Fraser, Claire M., Rasko, David A., Filler, Sco

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 2.20 MB

english, 2018

6

Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions

Fricke, W. Florian, Rasko, David A.

Journal:

Nature Reviews Genetics

Year:

2013

Language:

english

File:

PDF, 286 KB

english, 2013

7

Draft Genome Sequence of Saccharibacillus sp. Strain WB 17, Isolated from Wheat Phyllosphere

Besaury, Ludovic, Remond, Caroline, Rasko, David

Journal:

Microbiology Resource Announcements

Year:

2020

File:

PDF, 111 KB

2020

8

Genomics of the Bacillus cereus group of organisms

David A. Rasko, Michael R. Altherr, Cliff S. Han, Jacques Ravel

Journal:

FEMS Microbiology Reviews

Year:

2005

Language:

english

File:

PDF, 830 KB

english, 2005

9

Genetic changes associated with the temporal shift in invasive non-typhoidal Salmonella serovars in Bamako Mali

Bornstein, Kristin, Tennant, Sharon M., Hazen, Tracy H., Sorkin, John D., Tapia, Milagritos D., Sow, Samba O., Onwuchekwa, Uma, Levine, Myron M., Rasko, David A., Darton, Thomas C.

Journal:

PLoS Neglected Tropical Diseases

Year:

2019

Language:

english

File:

PDF, 2.69 MB

english, 2019

10

Draft Genome Sequences of Lactobacillus helveticus , Lactobacillus fermentum , and Lactobacillus delbrueckii Strains from African Fermented Nono

Cho, Gyu-Sung, Fagbemigun, Olakunle, Brinks, Erik, Adewumi, Gbenga A., Oguntoyinbo, Folarin A., Franz, Charles M. A. P., Rasko, David

Journal:

Microbiology Resource Announcements

Year:

2020

File:

PDF, 130 KB

2020

11

The Synthesis of OspD3 (ShET2) in Shigella flexneri is Independent of OspC1

Faherty, Christina S., Wu, Tao, Morris, Carolyn R., Grassel, Christen L., Rasko, David A., Harper, Jill M., Shea-Donohue, Terez, Fasano, Alessio, Barry, Eileen M.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.17 MB

english, 2016

12

Development of novel plasmid vectors and a promoter trap system in Francisella tularensis compatible with the pFLN10 based plasmids

David A. Rasko, Carlos D. Esteban, Vanessa Sperandio

Journal:

Year:

2007

Language:

english

File:

PDF, 498 KB

english, 2007

13

Exploiting the explosion of information associated with whole genome sequencing to tackle Shiga toxin-producing Escherichia coli (STEC) in global food production systems

Franz, Eelco, Delaquis, Pascal, Morabito, Stefano, Beutin, Lothar, Gobius, Kari, Rasko, David A., Bono, Jim, French, Nigel, Osek, Jacek, Lindstedt, Bjørn-Arne, Muniesa, Maite, Manning, Shannon, LeJeun

Journal:

International Journal of Food Microbiology

Year:

2014

Language:

english

File:

PDF, 1.14 MB

english, 2014

14

The “Crumple Zone” hypothesis: Association of frontal sinus volume and cerebral injury after craniofacial trauma

Cai, Stephen S., Mossop, Corey, Diaconu, Silviu C., Hersh, David S., AlFadil, Sara, Rasko, Yvonne M., Christy, Michael R., Granta, Michael P., Nam, Arthur J.

Journal:

Journal of Cranio-Maxillofacial Surgery

Year:

2017

Language:

english

File:

PDF, 748 KB

english, 2017

15

The Role of Genomics in the Identification, Prediction, and Prevention of Biological Threats

Fricke, W. Florian, Rasko, David A., Ravel, Jacques

Journal:

Year:

2009

Language:

english

File:

PDF, 99 KB

english, 2009

16

ZNF265: A Novel Spliceosomal Protein Able to Induce Alternative Splicing

David J. Adams, Louise van der Weyden, Akila Mayeda, Stefan Stamm, Brian J. Morris and John E. J. Rasko

Journal:

The Journal of Cell Biology

Year:

2001

Language:

english

File:

PDF, 2.62 MB

english, 2001

17

Changes in microbiome during and after travellers’ diarrhea: what we know and what we do not

Rasko, David A.

Journal:

Journal of Travel Medicine

Year:

2017

Language:

english

File:

PDF, 229 KB

english, 2017

18

Draft Genome Sequence of a Sulfate-Reducing Bacterium, “ Desulfofundulus salinum ” 435 T , Isolated from a High-Temperature Gas Field in Russia

Grouzdev, Denis S., Bidzhieva, Salimat K., Tourova, Tatiyana P., Krutkina, Maria S., Poltaraus, Andrey B., Nazina, Tamara N., Rasko, David

Journal:

Microbiology Resource Announcements

Year:

2018

Language:

english

File:

PDF, 150 KB

english, 2018

19

Draft Genome Sequence of Proteus mirabilis UMB1310, Isolated from the Female Urinary Tract

Allen, Olivia, Miller-Ensminger, Taylor, Voukadinova, Adelina, Wolfe, Alan J., Putonti, Catherine, Rasko, David

Journal:

Microbiology Resource Announcements

Year:

2020

File:

PDF, 130 KB

2020

20

The first decade of microbial genomics: what have we learned and where are we going next?

David A Rasko, Emmanuel F Mongodin

Journal:

Year:

2005

Language:

english

File:

PDF, 52 KB

english, 2005

21

Insights into the environmental reservoir of pathogenic Vibrio parahaemolyticus using comparative genomics

Hazen, Tracy H., Lafon, Patricia C., Garrett, Nancy M., Lowe, Tiffany M., Silberger, Daniel J., Rowe, Lori A., Frace, Michael, Parsons, Michele B., Bopp, Cheryl A., Rasko, David A., Sobecky, Patricia

Journal:

Frontiers in Microbiology

Year:

2015

Language:

english

File:

PDF, 5.14 MB

english, 2015

22

The Mastitis Pathogens Culture Collection

Dufour, Simon, Labrie, Josée, Jacques, Mario, Rasko, David

Journal:

Microbiology Resource Announcements

Year:

2019

Language:

english

File:

PDF, 125 KB

english, 2019

23

Draft Genome Sequences of Multidrug-Resistant Campylobacter jejuni Strains Isolated from Chickens in Central China

Cheng, Yiluo, Zhang, Wenting, Lu, Qin, Wen, Guoyuan, Luo, Qingping, Shao, Huabin, Zhang, Tengfei, Rasko, David

Journal:

Microbiology Resource Announcements

Year:

2020

File:

PDF, 137 KB

2020

24

Complete Genome Sequence and Annotation of Campylobacter jejuni YH003, Isolated from Retail Chicken

He, Yiping, Reed, Sue, Strobaugh, Terence P., Rasko, David

Journal:

Microbiology Resource Announcements

Year:

2020

File:

PDF, 117 KB

2020

25

Comparative genomic analysis provides insight into the phylogeny and virulence of atypical enteropathogenic Escherichia coli strains from Brazil

Hernandes, Rodrigo T., Hazen, Tracy H., dos Santos, LuÃs F., Richter, Taylor K. S., Michalski, Jane M., Rasko, David A., Yang, Ruifu

Journal:

PLoS Neglected Tropical Diseases

Year:

2020

File:

PDF, 4.28 MB

2020

26

Draft Genome Sequences of 12 Shiga Toxin-Producing Escherichia coli Strains Isolated from Dairy Cattle in Portugal

Fiedler, Gregor, Ballem, Andressa, Brinks, Erik, Almeida, Carina, Franz, Charles M. A. P., Oliveira, Hugo, Rasko, David

Journal:

Microbiology Resource Announcements

Year:

2020

File:

PDF, 151 KB

2020

27

Bugs N the 'hood

David A. Rasko, Claire M. Fraser

Journal:

Trends in Microbiology

Year:

2004

Language:

english

File:

PDF, 207 KB

english, 2004

28

Identification of the Mitochondrial MSRB2 as a Binding Partner of LG72

Otte, David-Marian, Raskó, Tamás, Wang, Mengzhe, Dreiseidler, Michael, Drews, Eva, Schrage, Hanna, Wojtalla, Alexandra, Höhfeld, Jörg, Wanker, Erich, Zimmer, Andreas

Journal:

Cellular and Molecular Neurobiology

Year:

2014

Language:

english

File:

PDF, 4.48 MB

english, 2014

29

The Complete Genome Sequence of Yersinia pseudotuberculosis IP31758, the Causative Agent of Far East Scarlet-Like Fever

Eppinger, Mark, Rosovitz, M. J., Fricke, Wolfgang Florian, Rasko, David A., Kokorina, Galina, Fayolle, Corinne, Lindler, Luther E., Carniel, Elisabeth, Ravel, Jacques

Journal:

Year:

2007

Language:

english

File:

PDF, 1.66 MB

english, 2007

30

The QseC Adrenergic Signaling Cascade in Enterohemorrhagic E. coli (EHEC)

Hughes, David T., Clarke, Marcie B., Yamamoto, Kaneyoshi, Rasko, David A., Sperandio, Vanessa, Stebbins, C. Erec

Journal:

Year:

2009

Language:

english

File:

PDF, 1.10 MB

english, 2009

31

Characterization of a large antibiotic resistance plasmid found in enteropathogenic Escherichia coli strain B171 and its relatedness to plasmids of diverse E. coli and Shigella

Hazen, Tracy H., Michalski, Jane, Nagaraj, Sushma, Okeke, Iruka N., Rasko, David A.

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2017

Language:

english

File:

PDF, 1.50 MB

english, 2017

32

Complete Genome Sequence of Leuconostoc kimchii Strain NKJ218, Isolated from Homemade Kimchi

Jung, Ji Young, Jeong, Jin-Woo, Lee, Seung-Young, Jin, Hyun Mi, Choi, Hee Won, Ryu, Byung-Gon, Han, Sang-Soo, Kang, Hye Kyeong, Chung, Eu Jin, Choi, Kyung-Min, Rasko, David

Journal:

Microbiology Resource Announcements

Year:

2019

File:

PDF, 139 KB

2019

33

Draft Genome Sequences of Six Flavobacterium psychrophilum Strains Isolated from Dead Juvenile Ayu ( Plecoglossus altivelis altivelis ) Near the Mouth of Nahari River, Kochi, Japan

Yamashita, Hazuki, Wada, Takayuki, Kato, Yusuke, Ikeda, Takuji, Imajoh, Masayuki, Rasko, David

Journal:

Microbiology Resource Announcements

Year:

2019

Language:

english

File:

PDF, 129 KB

english, 2019

34

Low-Dose Computed Tomographic Scans for Postoperative Evaluation of Craniomaxillofacial Fractures: A Pilot Clinical Study

Elegbede, Adekunle, Diaconu, Silviu, Dreizin, David, Li, Guang, Dunlow, Ryan, Ngaage, Ledibabari M., Rasko, Yvonne, Liang, Fan, Grant, Michael P., Nam, Arthur J.

Journal:

Plastic & Reconstructive Surgery

Year:

2020

File:

PDF, 1.06 MB

2020

35

Genomics of the Bacillus cereus group of organisms

David A. Rasko, Michael R. Altherr, Cliff S. Han, Jacques Ravel

Journal:

FEMS Microbiology Reviews

Year:

2005

Language:

english

File:

PDF, 830 KB

english, 2005

36

Lipopolysaccharide structures of Helicobacter pylori genomic strains 26695 and J99, mouse model H. pylori Sydney strain, H. pylori P466 carrying sialyl Lewis X, and H. pylori UA915 expressing Lewis B : Classification of H. pylori lipopolysaccharides into glycotype families

Mario A. Monteiro, Ben J. Appelmelk, David A. Rasko, Anthony P. Moran, Sean O. Hynes, Leann L. MacLean, Ken H. Chan, Frank St Michael, Susan M. Logan, Jani O'Rourke, Adrian Lee, Diane E. Taylor, Malco

Journal:

Year:

2000

Language:

english

File:

PDF, 1.42 MB

english, 2000

37

Major Structural Differences and Novel Potential Virulence Mechanisms from the Genomes of Multiple Campylobacter Species

Fouts, Derrick E., Mongodin, Emmanuel F., Mandrell, Robert E., Miller, William G., Rasko, David A., Ravel, Jacques, Brinkac, Lauren M., DeBoy, Robert T., Parker, Craig T., Daugherty, Sean C., Dodson,

Journal:

Year:

2005

Language:

english

File:

PDF, 544 KB

english, 2005

38

Diversity among blaKPC-containing plasmids in Escherichia coli and other bacterial species isolated from the same patients

Hazen, Tracy H., Mettus, Roberta, McElheny, Christi L., Bowler, Sarah L., Nagaraj, Sushma, Doi, Yohei, Rasko, David A.

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 2.49 MB

english, 2018

39

Complete Genome Sequence of Halomonas sulfidaeris Strain Esulfide1 Isolated from a Metal Sulfide Rock at a Depth of 2,200 Meters, Obtained Using Nanopore Sequencing

Saito, Motofumi, Nishigata, Akane, Galipon, Josephine, Arakawa, Kazuharu, Rasko, David

Journal:

Microbiology Resource Announcements

Year:

2019

Language:

english

File:

PDF, 130 KB

english, 2019

40

Draft Genomic Sequence of Multidrug-Resistant Klebsiella pneumoniae B8S35, Isolated from Retail Chicken Skin

Xu, Aixia, Mackay, William, Sommers, Christopher H., Rasko, David

Journal:

Microbiology Resource Announcements

Year:

2019

Language:

english

File:

PDF, 109 KB

english, 2019

41

Complete Genome Sequence of Azoarcus sp. Strain DD4, a Gram-Negative Propanotroph That Degrades 1,4-Dioxane and 1,1-Dichloroethylene

Deng, Daiyong, Li, Fei, Ye, Lei, Li, Mengyan, Rasko, David

Journal:

Microbiology Resource Announcements

Year:

2019

Language:

english

File:

PDF, 133 KB

english, 2019

42

Complete Genome Sequence of Clostridium innocuum Strain LC-LUMC-CI-001, Isolated from a Patient with Recurrent Antibiotic-Associated Diarrhea

Cherny, K. E., Ozer, E. A., Kochan, T. J., Johnson, S., Kociolek, L. K., Rasko, David

Journal:

Microbiology Resource Announcements

Year:

2020

File:

PDF, 138 KB

2020

43

Genome Sequences of 14 Escherichia coli O157:H7 Strains Isolated before and during the Time Frame of the 2018 Multistate Outbreak Associated with Romaine Lettuce

Stanton, Eliot, Wagner, Sara, Florek, Kelsey R., Kaspar, Charles W., Rasko, David

Journal:

Microbiology Resource Announcements

Year:

2020

File:

PDF, 139 KB

2020

44

Draft Genome Sequence of Phenol-Degrading Variovorax boronicumulans Strain c24

Abdul Aziz, Fatma Azwani, Suzuki, Kenshi, Amano, Koki, Moriuchi, Ryota, Dohra, Hideo, Tashiro, Yosuke, Futamata, Hiroyuki, Rasko, David

Journal:

Microbiology Resource Announcements

Year:

2020

File:

PDF, 151 KB

2020

45

Draft Genome Sequences of Two Campylobacter jejuni Strains That Show Significantly Different Colonization Potentials in Chickens

Sung, Kidon, Khajanchi, Bijay K., Hiett, Kelli L., Line, J. Eric, Khan, Saeed A., Rasko, David

Journal:

Microbiology Resource Announcements

Year:

2020

File:

PDF, 138 KB

2020

46

The LysR-type regulator QseA regulates both characterized and putative virulence genes in enterohaemorrhagic Escherichia coli O157:H7

Melissa M. Kendall, David A. Rasko, Vanessa Sperandio

Journal:

Molecular Microbiology

Year:

2010

Language:

english

File:

PDF, 1.11 MB

english, 2010

47

Mouse cardiac troponin I model of hypertrophic cardiomyopathy: Phenotype associated with abnormal calcium handling

Tatiana Tsoutsman*, Jessica Chung, Alessandra Doolan, Lan Nguyen, Iwan A. Williams, Emily Tu, Lien Lam, Charles G. Bailey, John E.J. Rasko, David G. Allen, Christopher Semsarian

Journal:

Journal of Molecular and Cellular Cardiology

Year:

2006

Language:

english

File:

PDF, 54 KB

english, 2006

48

Investigating the genome diversity of B. cereus and evolutionary aspects of B. anthracis emergence

Leka Papazisi, David A. Rasko, Shashikala Ratnayake, Geoff R. Bock, Brian G. Remortel, Lakshmi Appalla, Jia Liu, Tatiana Dracheva, John C. Braisted, Shamira Shallom, Behnam Jarrahi, Erik Snesrud, Susi

Journal:

Year:

2011

Language:

english

File:

PDF, 1.20 MB

english, 2011

49

Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation

David A. Rasko, Patricia L. Worsham, Terry G. Abshire, Scott T. Stanley, Jason D. Bannan, Mark R. Wilson, Richard J. Langham, R. Scott Decker, Lingxia Jiang, Timothy D. Read, Adam M. Phillippy, Steven

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.36 MB

english, 2011

50

Erratum to “The “Crumple Zone” hypothesis: Association of frontal sinus volume and cerebral injury after craniofacial trauma” [J Craniomaxillofac Surg 45 (2017) 1094–1098]

Cai, Stephen S., Mossop, Corey, Diaconu, Silviu C., Hersh, David S., AlFadil, Sara, Rasko, Yvonne M., Christy, Michael R., Grant, Michael P., Nam, Arthur J.

Journal:

Journal of Cranio-Maxillofacial Surgery

Year:

2017

Language:

english

File:

PDF, 115 KB

english, 2017

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